In this article, Liz Thorn, Senior Consultant, Diagnostics at Team Consulting, explores the various in vitro diagnostics (IVDs) techniques available and where they are best applied in the context of influenza and COVID-19.
There has been a lot of discussion about in vitro diagnostics (IVDs) by journalists over the last 12 months, with the relative merits of different types of tests being evaluated in the hope that the best method can be identified. In the 21st Century we have come to expect that technology enables perfection, therefore we anticipate a binary answer, with things being either right or wrong, or good or bad. The truth for IVD test methods, as it is with most things in life, is a bit more complicated.
This report addresses the key factors shaping pharmaceutical formulation, including regulation, QC and analysis.
Access the full report now to discover the techniques, tools and innovations that are transforming pharmaceutical formulation, and learn how to position your organisation for long-term success.
What you’ll discover:
Key trends shaping the pharmaceutical formulation sector
Innovations leading progress in pharmaceutical formulation and how senior professionals can harness their benefits
Considerations and best practices when utilising QbD during formulation of oral solid dosage forms
Can’t attend live? No worries – register to receive the recording post-event.
Rather than asking which is the best IVD test method, the question we should pose is which is the best IVD test method for a specific situation. Each test method has different equipment requirements and provides different information; therefore, when trying to establish which is best, you need to think about the situation you are testing in and what information you are hoping to derive.
Obviously, most of the focus at the moment is on SARS-CoV-2 / COVID-19, but we will look at another example, influenza, which is more established and analogous to COVID-19. There are multiple techniques used to detect flu infection, from lateral flow tests, to Polymerase Chain Reaction (PCR) and genetic sequencing, all of which have also been used to detect COVID-19 over the past year.
Lateral flow
‘Lateral flow’ is the format of lots of tests. Some are designed to detect the virus itself (antigen tests) and others to detect antibodies to the virus.
In the case of influenza, the lateral flow tests detect the virus and generally differentiate between the two major types of human influenza, A and B.
The information supplied will rule in or rule out a flu infection and determines if you have influenza A or B (the latter often considered to cause more serious infections). The result of a lateral flow test may allow a physician, in some circumstances, to prescribe an anti-viral treatment such as zanamivir (Relenza) or perhaps more commonly oseltamivir (Tamiflu).
Lateral flow tests are easy to use, can be carried out in non-lab settings and take only 10-20 minutes to generate a result. In addition, they have a low cost, relative to the other test methods.
There are limitations, however. Lateral flow antigen tests are less sensitive than PCR and there is a risk of obtaining false negative results if there is insufficient virus to be detectable by this less sensitive test method. The sensitivity limitation has been a frequent topic of discussion in the popular press, but not always balanced with the benefits. A positive result is unlikely to be incorrect. Lateral flow tests do not require highly skilled laboratory personnel or equipment to be carried out and can therefore be deployed in lots of different settings and at significant scale. In the context of COVID-19, this means that testing can be carried out in workplaces and schools, resulting in the detection of asymptomatic cases which can help stop the spread of infection.
PCR
PCR assays, or other nucleic acid test assays, can be designed to provide more information about the virus being detected, compared to a lateral flow test. The exact strain of the virus can be targeted, as well as markers for resistance to the commonly prescribed anti-viral treatments. Some nucleic acid tests can also be multiplexed, ie, they can be designed to detect other respiratory infections at the same time. The majority of these tests are carried out in laboratories and require skilled lab staff, specialised equipment and some time to run. While PCR tests do not provide immediate results, they can provide comprehensive information about the infection, such as the strain (eg, H1N1, a strain of influenza with pandemic potential) and the suitability of certain treatments.
The high sensitivity (low false negative rate) and specificity (low false positive rate) of PCR tests means that the results they provide can be accepted with confidence. As such, PCR is a powerful tool.
PCR is so sensitive that it can detect extremely low levels of virus, which reduces the likelihood of false negatives. However, though a positive result indicates the presence of the viral genetic material (nucleic acid), it does not indicate whether the virus is still viable (alive) and capable of causing an infection. Inevitably, there are therefore limitations to PCR. The tests are designed to target a short sequence of nucleic acid and, as the virus mutates over time, the target sequence may no longer detect the circulating variant of the virus. As such, new PCR assays may need to be developed over time as the virus mutates into new strains.
Genetic sequencing
Genetic sequencing… will be an essential tool in determining whether the current vaccines need to be adjusted to maintain efficacy”
Genetic sequencing by traditional methods looks at all of the virus’ genetic material and can therefore identify any variations that can lead to new strains. The World Health Organization (WHO) has a network of laboratories that sequence samples around the world as part of a flu surveillance programme. The information derived from this sequencing testing is used to inform the composition of the influenza vaccine each year. Sequencing really is the holy grail in terms of understanding the particular virus; however, it is also a highly skilled and costly process – and thus only available in a limited number of laboratories.
In the years ahead sequencing will become increasingly important for tracking SARS-CoV-2. Genetic sequencing has already been invaluable in detecting more virulent variants and it will be an essential tool in determining whether the current vaccines need to be adjusted to maintain efficacy against the circulating strains.
Conclusion
As the SARS-Cov-2 pandemic has unfolded over the last year, the methods for the detection and diagnosis of COVID-19 have followed the same pattern as has been used for influenza for decades. However, due to the size of the pandemic, the volume of tests being carried out for SARS-CoV-2 is exponentially greater than for influenza, reaching a scale that has never been seen before.
So, in terms of which is the best test, the answer is that it depends on where the test is being carried out and what information is required.
In terms of which is the best IVD test method for a specific situation, the following are arguably the best:
For low cost and non-lab settings in high volumes: lateral flow tests
For result accuracy: PCR
For detecting different variants of the virus: genetic sequencing
The current pandemic has clearly demonstrated just how valuable IVD testing is and each of these methods will continue to have an important role to play in helping to deal with this emergency.
About the author
Liz Thorn is Senior Consultant, Diagnostics at Team Consulting. She has more than 20 years of experience working in a variety of diagnostics/medical devices companies from start-ups to GE Healthcare. She has managed projects ranging from large multi-partner programmes to small assay developments. Liz is a graduate microbiologist and professional project manager.
This website uses cookies to enable, optimise and analyse site operations, as well as to provide personalised content and allow you to connect to social media. By clicking "I agree" you consent to the use of cookies for non-essential functions and the related processing of personal data. You can adjust your cookie and associated data processing preferences at any time via our "Cookie Settings". Please view our Cookie Policy to learn more about the use of cookies on our website.
This website uses cookies to improve your experience while you navigate through the website. Out of these cookies, the cookies that are categorised as ”Necessary” are stored on your browser as they are as essential for the working of basic functionalities of the website. For our other types of cookies “Advertising & Targeting”, “Analytics” and “Performance”, these help us analyse and understand how you use this website. These cookies will be stored in your browser only with your consent. You also have the option to opt-out of these different types of cookies. But opting out of some of these cookies may have an effect on your browsing experience. You can adjust the available sliders to ‘Enabled’ or ‘Disabled’, then click ‘Save and Accept’. View our Cookie Policy page.
Necessary cookies are absolutely essential for the website to function properly. This category only includes cookies that ensures basic functionalities and security features of the website. These cookies do not store any personal information.
Cookie
Description
cookielawinfo-checkbox-advertising-targeting
The cookie is set by GDPR cookie consent to record the user consent for the cookies in the category "Advertising & Targeting".
cookielawinfo-checkbox-analytics
This cookie is set by GDPR Cookie Consent WordPress Plugin. The cookie is used to remember the user consent for the cookies under the category "Analytics".
cookielawinfo-checkbox-necessary
This cookie is set by GDPR Cookie Consent plugin. The cookie is used to store the user consent for the cookies in the category "Necessary".
cookielawinfo-checkbox-performance
This cookie is set by GDPR Cookie Consent WordPress Plugin. The cookie is used to remember the user consent for the cookies under the category "Performance".
PHPSESSID
This cookie is native to PHP applications. The cookie is used to store and identify a users' unique session ID for the purpose of managing user session on the website. The cookie is a session cookies and is deleted when all the browser windows are closed.
viewed_cookie_policy
The cookie is set by the GDPR Cookie Consent plugin and is used to store whether or not user has consented to the use of cookies. It does not store any personal data.
zmember_logged
This session cookie is served by our membership/subscription system and controls whether you are able to see content which is only available to logged in users.
Performance cookies are includes cookies that deliver enhanced functionalities of the website, such as caching. These cookies do not store any personal information.
Cookie
Description
cf_ob_info
This cookie is set by Cloudflare content delivery network and, in conjunction with the cookie 'cf_use_ob', is used to determine whether it should continue serving “Always Online” until the cookie expires.
cf_use_ob
This cookie is set by Cloudflare content delivery network and is used to determine whether it should continue serving “Always Online” until the cookie expires.
free_subscription_only
This session cookie is served by our membership/subscription system and controls which types of content you are able to access.
ls_smartpush
This cookie is set by Litespeed Server and allows the server to store settings to help improve performance of the site.
one_signal_sdk_db
This cookie is set by OneSignal push notifications and is used for storing user preferences in connection with their notification permission status.
YSC
This cookie is set by Youtube and is used to track the views of embedded videos.
Analytics cookies collect information about your use of the content, and in combination with previously collected information, are used to measure, understand, and report on your usage of this website.
Cookie
Description
bcookie
This cookie is set by LinkedIn. The purpose of the cookie is to enable LinkedIn functionalities on the page.
GPS
This cookie is set by YouTube and registers a unique ID for tracking users based on their geographical location
lang
This cookie is set by LinkedIn and is used to store the language preferences of a user to serve up content in that stored language the next time user visit the website.
lidc
This cookie is set by LinkedIn and used for routing.
lissc
This cookie is set by LinkedIn share Buttons and ad tags.
vuid
We embed videos from our official Vimeo channel. When you press play, Vimeo will drop third party cookies to enable the video to play and to see how long a viewer has watched the video. This cookie does not track individuals.
wow.anonymousId
This cookie is set by Spotler and tracks an anonymous visitor ID.
wow.schedule
This cookie is set by Spotler and enables it to track the Load Balance Session Queue.
wow.session
This cookie is set by Spotler to track the Internet Information Services (IIS) session state.
wow.utmvalues
This cookie is set by Spotler and stores the UTM values for the session. UTM values are specific text strings that are appended to URLs that allow Communigator to track the URLs and the UTM values when they get clicked on.
_ga
This cookie is set by Google Analytics and is used to calculate visitor, session, campaign data and keep track of site usage for the site's analytics report. It stores information anonymously and assign a randomly generated number to identify unique visitors.
_gat
This cookies is set by Google Universal Analytics to throttle the request rate to limit the collection of data on high traffic sites.
_gid
This cookie is set by Google Analytics and is used to store information of how visitors use a website and helps in creating an analytics report of how the website is doing. The data collected including the number visitors, the source where they have come from, and the pages visited in an anonymous form.
Advertising and targeting cookies help us provide our visitors with relevant ads and marketing campaigns.
Cookie
Description
advanced_ads_browser_width
This cookie is set by Advanced Ads and measures the browser width.
advanced_ads_page_impressions
This cookie is set by Advanced Ads and measures the number of previous page impressions.
advanced_ads_pro_server_info
This cookie is set by Advanced Ads and sets geo-location, user role and user capabilities. It is used by cache busting in Advanced Ads Pro when the appropriate visitor conditions are used.
advanced_ads_pro_visitor_referrer
This cookie is set by Advanced Ads and sets the referrer URL.
bscookie
This cookie is a browser ID cookie set by LinkedIn share Buttons and ad tags.
IDE
This cookie is set by Google DoubleClick and stores information about how the user uses the website and any other advertisement before visiting the website. This is used to present users with ads that are relevant to them according to the user profile.
li_sugr
This cookie is set by LinkedIn and is used for tracking.
UserMatchHistory
This cookie is set by Linkedin and is used to track visitors on multiple websites, in order to present relevant advertisement based on the visitor's preferences.
VISITOR_INFO1_LIVE
This cookie is set by YouTube. Used to track the information of the embedded YouTube videos on a website.